scientific article; zbMATH DE number 434724

MaRDI QIDQ3139564zbMATHFDO

Authors M. A. Roytberg

Publication date 5 June 1994

zbMATH Keywords

maximum weightoptimal alignmentPascal procedurecomparison of biopolymer sequences

Mathematics Subject Classification ID

Computing methodologies and applications (68U99) Protein sequences, DNA sequences (92D20) Discrete mathematics in relation to computer science (68R99) Computational methods for problems pertaining to biology (92-08)

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• Using Hirschberg's algorithm to generate random alignments of strings
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• Fast trie-based method for multiple pairwise sequence alignment
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• A dynamic programming algorithm to find all solutions in a neighborhood of the optimum
• Alignment of random walks by dynamic programming
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• Tropical properties of alignment matrices
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