Pattern recognition in several sequences: Consensus and alignment

DOI10.1007/BF02459500zbMath0565.92003OpenAlexW1973754133WikidataQ52698269 ScholiaQ52698269MaRDI QIDQ1059004

D. J. Galas, Richard Arratia, Michael S. Waterman

Publication date: 1984

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/bf02459500

zbMATH Keywords

algorithmpattern recognitionhormonesbinding sitesconsensus alignmentmultiple sequencesregulatory regions in DNArepressor proteinssearch for mutational hotspotsunknown consensus sequences

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Computational methods for problems pertaining to biology (92-08) Software, source code, etc. for problems pertaining to biology (92-04) Physiological, cellular and medical topics (92Cxx)

Related Items (16)

Consensus functions and patterns in molecular sequences ⋮ On the consistency of the plurality rule consensus function for molecular sequences ⋮ On the longest common rigid subsequence problem ⋮ Matching among multiple random sequences ⋮ The asymptotic plurality rule for molecular sequences ⋮ Tutorial on large deviations for the binomial distribution ⋮ On the complexity of finding common approximate substrings. ⋮ Consensus weak hierarchies ⋮ Detection of subtle variations as consensus motifs ⋮ A survey of multiple sequence comparison methods ⋮ Consensus sequences based on plurality rule ⋮ A multiple sequence comparison method ⋮ Consensus rules for committee elections ⋮ The computation of consensus patterns in \(DNA\) sequences ⋮ Topological maps of protein sequences ⋮ Finding similar regions in many sequences

Cites Work

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• General methods of sequence comparison
• Renewal theory for several patterns
• Estimation of probability densities by empirical density functions†
• On Estimation of a Probability Density Function and Mode

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