A hidden Markov model applied to the protein 3D structure analysis

DOI10.1016/j.csda.2007.09.010zbMath1452.62842OpenAlexW2085031841WikidataQ57229934 ScholiaQ57229934MaRDI QIDQ1023658

L. Regad, P. Tufféry, A. C. Camproux, J. Maupetit, Frédéric Guyon

Publication date: 12 June 2009

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.csda.2007.09.010

zbMATH Keywords

hidden Markov modelsprotein structureoptimal structural alphabetprotein structural classification

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Applications of statistics to biology and medical sciences; meta analysis (62P10) Markov processes: estimation; hidden Markov models (62M05) Protein sequences, DNA sequences (92D20)

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Uses Software

• Pfam

Cites Work

• Exploring the state sequence space for hidden Markov and semi-Markov chains
• High-dimensional data clustering
• Estimating the dimension of a model
• Biological Sequence Analysis
• A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains
• On Information and Sufficiency