PROSITE
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Cited in
(72)- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
- In silico analysis of antibody triggering biofilm associated protein in \textit{Acinetobacter baumannii}
- Filtering degenerate patterns with application to protein sequence analysis
- On almost Monge all scores matrices
- Is it worth generating rules from neural network ensembles?
- Consensus string problem for multiple regular languages
- CAP3
- Generalized vec trick for fast learning of pairwise kernel models
- BioProspector
- Nomad
- New motifs within the NB-ARC domain of R proteins: probable mechanisms of integration of geminiviral signatures within the host species of fabaceae family and implications in conferring disease resistance
- Practical regular expression constrained sequence alignment
- Efficient algorithms for regular expression constrained sequence alignment
- Human proteins characterization with subcellular localizations
- Naccess
- Neighborhood functions and hill-climbing strategies dedicated to the generalized ungapped local multiple alignment
- MoDEL: an efficient strategy for ungapped local multiple alignment
- Varun
- LTR_FINDER
- Bcepred
- ELM
- RAST
- PredGPI
- SMART
- PSI-BLAST
- BLAST
- InterProScan
- WordSpy
- TM-align
- KinasePhos
- Pfam
- PAGE
- Bio2RDF
- rcdk
- MAMMOTH
- RLScore
- NetNGlyc
- Phobius
- ProP
- Circos
- Phospho.ELM
- Algorithm 360
- EFICAz
- OCTOPUS
- MotifVoter
- RNACompress
- NestedMICA
- ConFunc
- CompariMotif
- cPath
- MUSA
- ARGO
- SPACER
- fREDUCE
- WebMOTIFS
- MotifMiner
- PSLpred
- AutoMotif
- pSLIP
- PhyME
- ConSeq
- MuSiC
- Rate4Site
- Sulfinator
- TEIRESIAS
- EST_GENOME
- Understanding Protein-Protein Interactions: From Domain Level to Motif Level
- Closest substring problems for regular languages
- Comparative gene finding. Models, algorithms and implementation
- Construction of minimal deterministic finite automata from biological motifs
- Some string matching problems from bioinformatics which still need better solutions
- Developments from enquiries into the learnability of the pattern languages from positive data
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