Practical regular expression constrained sequence alignment

DOI10.1016/J.TCS.2020.02.017zbMATH Open1433.68635OpenAlexW3007933202MaRDI QIDQ2310751FDOQ2310751

Guilherme P. Telles, Lise Rommel Romero Navarrete

Publication date: 6 April 2020

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2020.02.017

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zbMATH Keywords

finite automatonregular expressionconstrained sequence alignmentPROSITE

Mathematics Subject Classification ID

Formal languages and automata (68Q45) Algorithms on strings (68W32)

Cites Work

• Title not available (Why is that?)
• Translating regular expressions into small \(\epsilon\)-free nondeterministic finite automata
• Regular Language Constrained Sequence Alignment Revisited
• Regular expression constrained sequence alignment
• A fast algorithm for the constrained multiple sequence alignment problem
• Constrained sequence alignment: A general model and the hardness results
• Efficient Algorithms for Regular Expression Constrained Sequence Alignment
• Combinatorial Pattern Matching

Cited In (4)

• Combinatorial Pattern Matching
• Regular expression constrained sequence alignment
• Approximate regular expression pattern matching with concave gap penalties
• Efficient Algorithms for Regular Expression Constrained Sequence Alignment

Uses Software

• PROSITE

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