Identify five kinds of simple super-secondary structures with quadratic discriminant algorithm based on the chemical shifts

DOI10.1016/J.JTBI.2015.06.006zbMath1343.92379OpenAlexW612804946WikidataQ30375814 ScholiaQ30375814MaRDI QIDQ739232

Gaoshan Kou, Yonge Feng

Publication date: 18 August 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2015.06.006

zbMATH Keywords

chemical shiftsanalysis of variancequadratic discriminant analysisprotein super secondary structure

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Uses Software

• Cell-PLoc
• PseAAC
• repDNA
• iNuc-PseKNC
• Pse-in-One
• iPro54-PseKNC
• iAMP-2L
• iDNA-Methyl
• PseDNA-Pro
• iMiRNA-PseDPC
• iLoc-Animal
• Plant-mPLoc
• iCTX-Type
• iTIS-PseTNC
• iNitro-Tyr
• iNuc-PhysChem

Cites Work

• iPro54-PseKNC
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
• Characterization-based Q--Q plots for testing multinormality
• Identify catalytic triads of serine hydrolases by support vector machines
• Prediction of protein structure classes using hybrid space of multi-profile Bayes and bi-gram probability feature spaces

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