Identify catalytic triads of serine hydrolases by support vector machines

DOI10.1016/J.JTBI.2004.02.019zbMATH Open1439.92141OpenAlexW2040861514WikidataQ44921864 ScholiaQ44921864MaRDI QIDQ2187672FDOQ2187672

Authors: Guo-Ping Zhou, Chin-Hung Jen, Shuo-Liang Lin, Kuo-Chen Chou, Yu-Dong Cai 

Publication date: 3 June 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2004.02.019

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zbMATH Keywords

support vector machinestructural bioinformaticscatalytic triaddistance-groupserine hydrolase

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cites Work

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Cited In (12)

• Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines
• Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers
• Prediction of protein submitochondria locations based on data fusion of various features of sequences
• Using LogitBoost classifier to predict protein structural classes
• Identify five kinds of simple super-secondary structures with quadratic discriminant algorithm based on the chemical shifts
• A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences
• Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition
• Predict potential drug targets from the ion channel proteins based on SVM
• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
• Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
• Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
• Protein classification using texture descriptors extracted from the protein backbone image

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