Identify catalytic triads of serine hydrolases by support vector machines

DOI10.1016/J.JTBI.2004.02.019MaRDI QIDQ2187672zbMATH OpenOpenAlexWikidataFDO

Authors Guo-Ping Zhou, Chin-Hung Jen, Shuo-Liang Lin, Kuo-Chen Chou, Yu-Dong Cai

Publication date 3 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.02.019

zbMATH Keywords

support vector machinestructural bioinformaticscatalytic triaddistance-groupserine hydrolase

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cited in

(12)

• Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
• Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines
• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
• Identify five kinds of simple super-secondary structures with quadratic discriminant algorithm based on the chemical shifts
• Predict potential drug targets from the ion channel proteins based on SVM
• Prediction of protein submitochondria locations based on data fusion of various features of sequences
• Protein classification using texture descriptors extracted from the protein backbone image
• Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers
• Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
• Using LogitBoost classifier to predict protein structural classes
• A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences
• Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition

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