A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences

DOI10.1016/j.jtbi.2011.09.028zbMath1307.92309OpenAlexW1977636670WikidataQ43032974 ScholiaQ43032974MaRDI QIDQ2263499

Donggang Hu, Jin-Long Lu, Xuehai Hu

Publication date: 18 March 2015

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.09.028

zbMATH Keywords

fractal dimensionsupport vector machinechaos game representationmesophilicthermophilic

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Related Items (1)

Predicting DNA binding proteins using support vector machine with hybrid fractal features

Uses Software

• Cell-PLoc
• AUTO-MUTE
• Cd-hit
• GPCR-2L
• iLoc-Virus
• iLoc-Euk
• Plant-mPLoc
• GPCR-GIA
• Quat-2L
• SecretP
• GPCR-CA

Cites Work

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• Advances in the implementation of the box-counting method of fractal dimension estimation
• Fractals related to long DNA sequences and complete genomes
• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
• Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
• Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms
• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
• Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
• \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
• The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
• Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
• Identify catalytic triads of serine hydrolases by support vector machines
• Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
• Prediction of protein submitochondria locations based on data fusion of various features of sequences

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