Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
From MaRDI portal
Publication:2187487
DOI10.1016/j.jtbi.2003.09.009zbMath1439.92148OpenAlexW2077715995WikidataQ52007252 ScholiaQ52007252MaRDI QIDQ2187487
Ka-Sing Lau, Zu-Guo Yu, V. V. Anh
Publication date: 3 June 2020
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://eprints.qut.edu.au/413/1/CGRmanu.pdf
multifractal analysisphylogenetic treecorrelation analysischaos game representation of protein sequences
Related Items
Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation ⋮ Multifractal analysis and topological properties of a new family of weighted Koch networks ⋮ Fractal approximation of chaos game representations using recurrent iterated function systems ⋮ Predicting DNA binding proteins using support vector machine with hybrid fractal features ⋮ A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC ⋮ Multifractal nature of network induced time delay in networked control systems ⋮ Critical node detection problem for complex network in undirected weighted networks ⋮ Emergence of the Sierpinski gasket in coin-dividing problems ⋮ Rényi continuous entropy of DNA sequences ⋮ Multifractal analysis for core-periphery structure of complex networks ⋮ Similarity analysis for DNA sequences based on chaos game representation. Case study: the albumin ⋮ Multifractality and Laplace spectrum of horizontal visibility graphs constructed from fractional Brownian motions ⋮ Identifying anticancer peptides by using a generalized chaos game representation ⋮ A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences ⋮ Fractal and complex network analyses of protein molecular dynamics ⋮ Comparative analysis of bacterial essential and nonessential genes with Hurst exponent based on chaos game representation ⋮ Multifractal temporally weighted detrended cross-correlation analysis of multivariate time series ⋮ Determination of multifractal dimensions of complex networks by means of the sandbox algorithm ⋮ A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation
Cites Work
- The infinite number of generalized dimensions of fractals and strange attractors
- Fractals related to long DNA sequences and complete genomes
- Dimensions of fractals related to languages defined by tagged strings in complete genomes
- Fractal measures and their singularities: The characterization of strange sets
- Multifractality in time series
- Avoided strings in bacterial complete genomes and a related combinatorial problem
- Distance, correlation and mutual information among portraits of organisms based on complete genomes
- Multifractal analysis of DNA sequences using a novel chaos-game representation