Fractal and complex network analyses of protein molecular dynamics

DOI10.1016/j.physa.2014.08.047zbMath1395.92118arXiv1403.4719OpenAlexW2050537626MaRDI QIDQ1783211

Zhi-Qin Zhao, Jin-Long Liu, Zu-Guo Yu, Yuan-Wu Zhou, V. V. Anh

Publication date: 20 September 2018

Published in: Physica A (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1403.4719

zbMATH Keywords

degree distributionfractal analysismultifractal detrended fluctuation analysishorizontal visibility graphprotein molecular dynamics

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Protein sequences, DNA sequences (92D20)

Related Items (8)

Cooperation in memory-based prisoner's dilemma game on interdependent networks ⋮ An information dimension of weighted complex networks ⋮ Asymptotic formula on average path length of fractal networks modeled on Sierpinski gasket ⋮ ASYMPTOTIC FORMULA OF AVERAGE DISTANCES ON FRACTAL NETWORKS MODELED BY SIERPINSKI TETRAHEDRON ⋮ Multifractality and Laplace spectrum of horizontal visibility graphs constructed from fractional Brownian motions ⋮ Structure properties of Koch networks based on networks dynamical systems ⋮ On the Long-Term Correlations and Multifractal Properties of Electric Arc Furnace Time Series ⋮ From standard alpha-stable Lévy motions to horizontal visibility networks: dependence of multifractal and Laplacian spectrum

Uses Software

• NAMD
• CHARMM
• Algorithm 97

Cites Work

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• Multifractal detrended fluctuation analysis of nonstationary time series
• Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
• Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
• RECURRENCE-BASED TIME SERIES ANALYSIS BY MEANS OF COMPLEX NETWORK METHODS
• Recurrence networks—a novel paradigm for nonlinear time series analysis
• From time series to complex networks: The visibility graph
• Fractal measures and their singularities: The characterization of strange sets
• Fractional Brownian Motions, Fractional Noises and Applications
• The geometry of chaotic dynamics --- a complex network perspective

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