Rényi continuous entropy of DNA sequences

DOI10.1016/J.JTBI.2004.06.030MaRDI QIDQ2186576zbMATH OpenOpenAlexWikidataFDO

Authors Susana Vinga, Jonas S. Almeida

Publication date 9 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.06.030

zbMATH Keywords

CGR/USMDNAinformation theoryParzen's methodRényi entropy

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Measures of information, entropy (94A17)

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Cites work

• A Mathematical Theory of Communication
• Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
• Finite sample effects in sequence analysis
• scientific article; zbMATH DE number 3143967 (Why is no real title available?)
• scientific article; zbMATH DE number 3173999 (Why is no real title available?)
• scientific article; zbMATH DE number 52032 (Why is no real title available?)
• scientific article; zbMATH DE number 107482 (Why is no real title available?)
• scientific article; zbMATH DE number 910859 (Why is no real title available?)
• scientific article; zbMATH DE number 1445329 (Why is no real title available?)
• scientific article; zbMATH DE number 3227527 (Why is no real title available?)
• Multifractal properties of Hao's geometric representations of DNA sequences
• On Estimation of a Probability Density Function and Mode
• Predicting the future of discrete sequences from fractal representations of the past
• Study of DNA binding sites using the Rényi parametric entropy measure
• The method to compare nucleotide sequences based on the minimum entropy principle

Cited in

(16)

• On some entropy functionals derived from Rényi information divergence
• Entropy concepts and DNA investigations
• Detecting life signatures with RNA sequence similarity measures
• The performances of the chi-square test and complexity measures for signal recognition in biological sequences
• Entropic fluctuations in DNA sequences
• A least-squares Monte Carlo approach to the estimation of enterprise risk
• Study of DNA binding sites using the Rényi parametric entropy measure
• scientific article; zbMATH DE number 910859 (Why is no real title available?)
• scientific article; zbMATH DE number 1445329 (Why is no real title available?)
• The Minimum Entropy Mapping Spectrum of a DNA Sequence
• scientific article; zbMATH DE number 6746646 (Why is no real title available?)
• Some results on quantile version of Rényi entropy of order statistics
• A neutral model of edge effects
• Entropy analysis of the DNA code dynamics in human chromosomes
• Faster asymptotic solutions for N-mixtures on large populations
• Beyond logarithmic bounds: querying in constant expected time with learned indexes

Describes a project that uses

Uses Software

• Matlab
• CDNA

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