Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

From MaRDI portal
Publication:1617497

DOI10.1016/j.jtbi.2008.11.003zbMath1400.92393OpenAlexW2151935677WikidataQ51861064 ScholiaQ51861064MaRDI QIDQ1617497

Dimitris Georgiou, Theodoros E. Karakasidis, Angela Torres, Juan. J. Nieto

Publication date: 8 November 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2008.11.003




Related Items (35)

Geometry-based distance for clustering amino acidsPredicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learningA method to distinguish between lysine acetylation and lysine methylation from protein sequencesElman RNN based classification of proteins sequences on account of their mutual informationComprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selectionA network-QSAR model for prediction of genetic-component biomarkers in human colorectal canceriCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprintsProtein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy imagesA computational technique to classify several fractional Brownian motion processesSome remarks on protein attribute prediction and pseudo amino acid compositionNaïve Bayes classifier with feature selection to identify phage virion proteinsA Hooke's law-based approach to protein folding rateA set of descriptors for identifying the protein-drug interaction in cellular networkingpLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAACCharacterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid propertiesA novel statistical measure for sequence comparison on the basis of \(k\)-word countsProtein space: a natural method for realizing the nature of protein universeiPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAACProtein classification using texture descriptors extracted from the protein backbone imageBilateral similarity function: a novel and universal method for similarity analysis of biological sequencesA classification-based prediction model of messenger RNA polyadenylation sitesA simple method to analyze the similarity of biological sequences based on the fuzzy theoryShannon, Rényie and Tsallis entropy analysis of DNA using phase plane2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acidsA study of entropy/clarity of genetic sequences using metric spaces and fuzzy setsPredicting ion channels and their types by the dipeptide mode of pseudo amino acid compositionA hybrid fuzzy K-harmonic means clustering algorithmA new hybrid fractal algorithm for predicting thermophilic nucleotide sequencesMulti-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localizationPrediction of protein-protein interaction sites using patch-based residue characterizationThe mean value of the squared path-difference distance for rooted phylogenetic treesPredicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition\textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sitesPredicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositionsInterrogating noise in protein sequences from the perspective of protein-protein interactions prediction


Uses Software


Cites Work


This page was built for publication: Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition