A simple method to analyze the similarity of biological sequences based on the fuzzy theory

DOI10.1016/j.jtbi.2010.05.008zbMath1460.92156OpenAlexW2074531750WikidataQ51697628 ScholiaQ51697628MaRDI QIDQ1720076

Yurong Wang, Wei Huang, Jianmin Zhang, Dan Huang

Publication date: 12 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2010.05.008

zbMATH Keywords

clustersimilaritybiological sequencesfuzzy method

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20) Fuzzy analysis in statistics (62A86)

Uses Software

• SPSS
• Cell-PLoc
• Memtype-2L
• ProtIdent
• GPCR-GIA
• GPCR-CA
• Signal-CF
• EzyPred
• HIVcleave
• Euk-mPLoc
• RNAlign
• FoldRate

Cites Work

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• RNA secondary structure comparison: Exact analysis of the Zhang-Shasha tree edit algorithm.
• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image