Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization

DOI10.1016/j.jtbi.2011.10.015zbMath1307.92085OpenAlexW1986465827WikidataQ38500179 ScholiaQ38500179MaRDI QIDQ2263504

Suyu Mei

Publication date: 18 March 2015

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.10.015

zbMATH Keywords

performance overestimationprotein subcellular localizationtransfer learninggene ontologynon-parametric multiple kernel learning

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (8)

Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning ⋮ Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection ⋮ Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images ⋮ \textit{SVM} ensemble based transfer learning for large-scale membrane proteins discrimination ⋮ Robust feature generation for protein subchloroplast location prediction with a weighted GO transfer model ⋮ Characterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid properties ⋮ Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions ⋮ Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine

Uses Software

• Cell-PLoc
• PSI-BLAST
• BLAST
• GPCR-2L
• iLoc-Virus
• Euk-PLoc
• iLoc-Euk
• Plant-mPLoc
• MultiLoc2
• SecretP
• OligoPred
• Euk-mPLoc
• Hum-mPLoc
• Hum-PLoc
• NR-2L
• MultiLoc

Cites Work

• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
• Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
• \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

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