Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
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Publication:2351316
DOI10.1016/j.jtbi.2014.10.008zbMath1314.92055OpenAlexW2026463883WikidataQ34451095 ScholiaQ34451095MaRDI QIDQ2351316
Publication date: 23 June 2015
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2014.10.008
Related Items (11)
Predicting Golgi-resident protein types using pseudo amino acid compositions: approaches with positional specific physicochemical properties ⋮ pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach ⋮ An estimator for local analysis of genome based on the minimal absent word ⋮ Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach ⋮ BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC ⋮ pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC ⋮ iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC ⋮ SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins ⋮ Discriminate protein decoys from native by using a scoring function based on ubiquitous phi and psi angles computed for all atom ⋮ Prediction of Golgi-resident protein types using general form of Chou's pseudo-amino acid compositions: approaches with minimal redundancy maximal relevance feature selection ⋮ iLM-2L: a two-level predictor for identifying protein lysine methylation sites and their methylation degrees by incorporating K-gap amino acid pairs into Chou's general PseAAC
Uses Software
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- Naïve Bayes classifier with feature selection to identify phage virion proteins
- On qualitative robustness of support vector machines
- Some remarks on protein attribute prediction and pseudo amino acid composition
- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
- Support-vector networks
- Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
- A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC
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