An estimator for local analysis of genome based on the minimal absent word

DOI10.1016/J.JTBI.2016.01.023MaRDI QIDQ306587zbMATHOpenAlexWikidataFDO

Authors Lianping Yang, Haoyue Fu, Chenhui Yang, Xiangde Zhang

Publication date 1 September 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2016.01.023

zbMATH Keywords

alignment-freerelative featurevisual comparison

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cites work

• A new method to cluster DNA sequences using Fourier power spectrum
• A novel descriptor of protein sequences and its application
• Alignment free comparison: \(k\) word voting model and its applications
• An improved model for whole genome phylogenetic analysis by Fourier transform
• Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
• Combinatorial Pattern Matching
• Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model
• Distance measures for biological sequences: some recent approaches
• Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
• Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
• Some remarks on protein attribute prediction and pseudo amino acid composition
• The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform

Cited in

(1)

• Efficient computation of shortest absent words in a genomic sequence

Describes a project that uses

Uses Software

• PredLactamase
• repDNA
• PseKNC-General
• iNuc-PseKNC
• iEnhancer-2L
• MultiP-SChlo
• Pse-in-One
• iRSpot-PseDNC
• iCTX-Type

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