Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model

DOI10.1016/J.JTBI.2014.10.014zbMath1314.92069OpenAlexW2056108729WikidataQ34450984 ScholiaQ34450984MaRDI QIDQ2351334

Maqsood Hayat, Zaheer Ullah Khan, Muazzam Ali Khan

Publication date: 23 June 2015

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2014.10.014

zbMATH Keywords

\(K\)-nearest neighborenzyme engineeringPseudo amino acid composition

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40)

Related Items (10)

pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach ⋮ An estimator for local analysis of genome based on the minimal absent word ⋮ IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition ⋮ Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach ⋮ BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC ⋮ iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences ⋮ Interaction between epidemic spread and collective behavior in scale-free networks with community structure ⋮ Discriminate protein decoys from native by using a scoring function based on ubiquitous phi and psi angles computed for all atom ⋮ Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition ⋮ iLM-2L: a two-level predictor for identifying protein lysine methylation sites and their methylation degrees by incorporating K-gap amino acid pairs into Chou's general PseAAC

Uses Software

• LIBSVM
• Cell-PLoc
• iNuc-PseKNC
• Acalpred
• propy
• PseAAC-Builder
• iRSpot-TNCPseAAC
• PseAAC-General
• PseKNC
• iSS-PseDNC
• iCTX-Type
• iSNO-PseAAC
• iTIS-PseTNC
• iNuc-PhysChem
• EzyPred
• Hum-PLoc
• iHyd-PseAAC

Cites Work

• Some remarks on protein attribute prediction and pseudo amino acid composition
• Prediction of protein structure classes using hybrid space of multi-profile Bayes and bi-gram probability feature spaces
• Unnamed Item

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