A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
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Publication:1631276
DOI10.1016/j.compbiolchem.2010.09.002zbMath1403.92221OpenAlexW2089989707WikidataQ34151702 ScholiaQ34151702MaRDI QIDQ1631276
Ganapati Panda, Sitanshu Sekhar Sahu
Publication date: 6 December 2018
Published in: Computational Biology and Chemistry (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2010.09.002
Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)
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Uses Software
Cites Work
- Variable predictive model based classification algorithm for effective separation of protein structural classes
- Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Using LogitBoost classifier to predict protein structural classes
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
- Discrete Cosine Transform