Variable predictive model based classification algorithm for effective separation of protein structural classes

DOI10.1016/J.COMPBIOLCHEM.2008.03.009MaRDI QIDQ1004941zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Rao Raghuraj, Samavedham Lakshminarayanan

Publication date 12 March 2009

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2008.03.009

zbMATH Keywords

discriminant analysiscomputational biologyprotein classificationsecondary structure predictionvariable predictive model

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Recommendations

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• Solving large protein secondary structure classification problems by a nonlinear complementarity algorithm with {0, 1} variables
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Cites work

• scientific article; zbMATH DE number 3565945 (Why is no real title available?)
• Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
• Role and results of statistical methods in protein fold class prediction

Cited in

(6)

• Variable predictive models-a new multivariate classification approach for pattern recognition applications
• An association multi-classification algorithm based on the secondary structure sequence of proteins
• A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
• On classification of PDZ domains: a computational study
• A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
• Solving large protein secondary structure classification problems by a nonlinear complementarity algorithm with {0, 1} variables

Describes a project that uses

Uses Software

• Matlab

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