Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
DOI10.1016/J.PATCOG.2006.02.014zbMATH Open1103.68767OpenAlexW2105634619WikidataQ56993507 ScholiaQ56993507MaRDI QIDQ850136FDOQ850136
Authors: Łukasz A. Kurgan, Leila Homaeian 
Publication date: 15 November 2006
Published in: Pattern Recognition (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.patcog.2006.02.014
Recommendations
- A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
- A comment on ``Prediction of protein structural classes by a new measure of information discrepancy
- Improving the prediction accuracy of protein structural class: approached with alternating word frequency and normalized Lempel-Ziv complexity
- A protein structural classes prediction method based on PSI-BLAST profile
- Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition
Learning and adaptive systems in artificial intelligence (68T05) Pattern recognition, speech recognition (68T10)
Cites Work
- Wrappers for feature subset selection
- Random forests
- Improvements to Platt's SMO Algorithm for SVM Classifier Design
- Ridge Estimators in Logistic Regression
- Support vector machines for prediction of protein domain structural class
- Support Vector Machines for Protein Fold Class Prediction
- Approximation, dimension reduction, and nonconvex optimization using linear superpositions of Gaussians
Cited In (16)
- A protein structural classes prediction method based on PSI-BLAST profile
- New methods for the prediction and classification of protein domains.
- Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
- Improving the prediction accuracy of protein structural class: approached with alternating word frequency and normalized Lempel-Ziv complexity
- Variable predictive model based classification algorithm for effective separation of protein structural classes
- Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition
- A comment on ``Prediction of protein structural classes by a new measure of information discrepancy
- Predict potential drug targets from the ion channel proteins based on SVM
- Homology modeling of membrane proteins: a critical assessment
- A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Novel scales based on hydrophobicity indices for secondary protein structure
- Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
- Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition
- Prediction of protein structure classes using hybrid space of multi-profile Bayes and bi-gram probability feature spaces
- Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
Uses Software
This page was built for publication: Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q850136)
