Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
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Publication:850136
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Cites work
- Approximation, dimension reduction, and nonconvex optimization using linear superpositions of Gaussians
- Improvements to Platt's SMO Algorithm for SVM Classifier Design
- Random forests
- Ridge Estimators in Logistic Regression
- Support vector machines for prediction of protein domain structural class
- Support vector machines for protein fold class prediction
- Wrappers for feature subset selection
Cited in
(17)- Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
- Variable predictive model based classification algorithm for effective separation of protein structural classes
- New methods for the prediction and classification of protein domains.
- Novel hybrid method for the evaluation of parameters contributing in determination of protein structural classes
- A comment on ``Prediction of protein structural classes by a new measure of information discrepancy
- Homology modeling of membrane proteins: a critical assessment
- A protein structural classes prediction method based on PSI-BLAST profile
- Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Predict potential drug targets from the ion channel proteins based on SVM
- Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
- Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
- Novel scales based on hydrophobicity indices for secondary protein structure
- Improving the prediction accuracy of protein structural class: approached with alternating word frequency and normalized Lempel-Ziv complexity
- A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
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- Prediction of protein structure classes using hybrid space of multi-profile Bayes and bi-gram probability feature spaces
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