Improving the prediction accuracy of protein structural class: approached with alternating word frequency and normalized Lempel-Ziv complexity

DOI10.1016/J.JTBI.2013.10.002MaRDI QIDQ2632396zbMATH OpenOpenAlexWikidataFDO

Authors Yunyun Liang, Xiguo Yuan, Shengli Zhang

Publication date 14 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2013.10.002

zbMATH Keywords

support vector machineprotein structure predictionfeature extractionlow-similarity

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Complexity classes (hierarchies, relations among complexity classes, etc.) (68Q15)

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Cites work

• A comment on ``Prediction of protein structural classes by a new measure of information discrepancy
• A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
• A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
• Normalized Lempel-Ziv complexity and its application in bio-sequence analysis
• On the Complexity of Finite Sequences
• Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
• Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
• Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Using LogitBoost classifier to predict protein structural classes
• Using pseudo-amino acid composition and support vector machine to predict protein structural class

Cited in

(7)

• A protein structural classes prediction method based on PSI-BLAST profile
• Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
• Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
• A comment on ``Prediction of protein structural classes by a new measure of information discrepancy
• Prediction of protein structural class based on different autocorrelation descriptors of position-specific scoring matrix
• A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
• A low computational complexity scheme for the prediction of intrinsically disordered protein regions

Describes a project that uses

Uses Software

• LogitBoost
• LIBSVM

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