Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition

DOI10.1016/J.JTBI.2013.11.021zbMath1412.92246OpenAlexW2061068513WikidataQ46358997 ScholiaQ46358997MaRDI QIDQ2632567

Liang Kong, Jinfeng Lv, Lichao Zhang

Publication date: 15 May 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2013.11.021

zbMATH Keywords

support vector machinesecondary structuresequence similarity

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20)

Related Items (4)

Novel 3D bio-macromolecular bilinear descriptors for protein science: predicting protein structural classes ⋮ Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC ⋮ Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach ⋮ Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition

Uses Software

• LIBSVM

Cites Work

• Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
• A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
• Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
• Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition
• iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints

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