Predict potential drug targets from the ion channel proteins based on SVM

DOI10.1016/j.jtbi.2009.11.002zbMath1403.92205OpenAlexW1978257492WikidataQ43244854 ScholiaQ43244854MaRDI QIDQ1629111

Y. Aharonov

Publication date: 11 December 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.11.002

zbMATH Keywords

cross-validationfeature selectionsecondary structuresubcellular localizationtwo-stage prediction

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (4)

Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure ⋮ Analysis and identification of toxin targets by topological properties in protein-protein interaction network ⋮ SDTRLS: predicting drug-target interactions for complex diseases based on chemical substructures ⋮ Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

Uses Software

• Cell-PLoc
• GPCR-GIA
• GPCR-CA
• Euk-mPLoc
• Hum-mPLoc
• SVM-Prot

Cites Work

• Prediction of structural classes for protein sequences and domains--impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
• Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
• Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
• Identify catalytic triads of serine hydrolases by support vector machines
• Unnamed Item

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