Phogly-PseAAC: prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity

DOI10.1016/J.JTBI.2015.04.016MaRDI QIDQ738204zbMATH OpenOpenAlexWikidataFDO

Authors D. Kharzeev

Publication date 16 August 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2015.04.016

zbMATH Keywords

\(F\)-scoreamino acid propensityphosphoglycerylation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components
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• PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction

Cites work

• A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
• Prediction of posttranslational modification sites from amino acid sequences with kernel methods
• Some remarks on protein attribute prediction and pseudo amino acid composition

Cited in

(6)

• Lysine acetylation sites prediction using an ensemble of support vector machine classifiers
• Prediction and functional analysis of prokaryote lysine acetylation site by incorporating six types of features into Chou's general PseAAC
• SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins
• Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components
• Predicting \(O\)-glycosylation sites in mammalian proteins by using SVMs
• Phogly-PseAAC

Describes a project that uses

Uses Software

• DAVID
• iEzy-drug
• iSNO-PseAAC
• GANNPhos
• GPS-SNO

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