Predicting O-glycosylation sites in mammalian proteins by using SVMs

DOI10.1016/J.COMPBIOLCHEM.2006.02.002MaRDI QIDQ2500380zbMATH OpenOpenAlexWikidataFDO

Authors Sujun Li, Boshu Liu, Rong Zeng, Yixue Li, Yu-Dong Cai

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.02.002

zbMATH Keywords

BioinformaticsO-glycosylationPost-translational modificationPredictionSupport vector machines

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40)

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Cites work

• scientific article; zbMATH DE number 823069 (Why is no real title available?)
• Radius Margin Bounds for Support Vector Machines with the RBF Kernel
• Support-vector networks

Cited in

(5)

• Distribution of N-glycosylation sequons in proteins: how apart are they?
• Prediction of S-sulfenylation sites using mRMR feature selection and fuzzy support vector machine algorithm
• Prediction of \(N\)-linked glycan branching patterns using artificial neural networks
• Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
• CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition

Describes a project that uses

Uses Software

• ROCR
• Bioconductor
• SVMlight

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