Prediction of posttranslational modification sites from amino acid sequences with kernel methods

DOI10.1016/j.jtbi.2013.11.012zbMath1412.92250OpenAlexW2068618715WikidataQ51137369 ScholiaQ51137369MaRDI QIDQ2632579

Yanyan Li

Publication date: 15 May 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2013.11.012

zbMATH Keywords

support vector machinephosphorylationO-glycosylationkinase-specific

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (1)

Phogly-PseAAC: prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity

Uses Software

• LIBSVM
• iSNO-AAPair
• KinasePhos
• Signal-CF
• AutoMotif

Cites Work

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• Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
• Predicting DNA- and RNA-binding proteins from sequences with kernel methods
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
• Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition

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