A set of descriptors for identifying the protein-drug interaction in cellular networking

DOI10.1016/J.JTBI.2014.06.008MaRDI QIDQ2415703zbMATH OpenOpenAlexWikidataFDO

Authors Loris Nanni, Alessandra Lumini, Sheryl Brahnam

Publication date 23 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2014.06.008

zbMATH Keywords

amino-acid sequencedrug-target interactionensemble of classifiersmachine learningposition specific scoring matrix

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition
• Sequence-based protein-protein interaction prediction via support vector machine
• Predicting protein-protein interactions by a supervised learning classifier
• High performance set of PseAAC and sequence based descriptors for protein classification
• Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach

Cites work

• High performance set of PseAAC and sequence based descriptors for protein classification
• scientific article; zbMATH DE number 4149885 (Why is no real title available?)
• iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
• Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
• Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
• Singular value decomposition and least squares solutions
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Statistical comparisons of classifiers over multiple data sets
• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

Cited in

(3)

• iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
• Local binary patterns of segments of a binary object for shape analysis
• Classification of signaling proteins based on molecular star graph descriptors using machine learning models

Describes a project that uses

Uses Software

• PseAAC
• iNuc-PseKNC
• Open Babel
• PseAAC-Builder
• propy
• PseAAC-General
• iEzy-drug
• iHSP-PseRAAAC
• AAindex
• iCDI-PseFpt
• Matlab
• iSNO-PseAAC
• iRSpot-PseDNC
• iRSpot-TNCPseAAC

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