SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees

DOI10.1016/J.COMPBIOLCHEM.2006.05.001zbMATH Open1098.92030DBLPjournals/candc/OgulM06OpenAlexW1969867523WikidataQ51153186 ScholiaQ51153186MaRDI QIDQ849533FDOQ849533

Authors Hasan Oğul, Erkan Ü. Mumcuoğlu 

Publication date 31 October 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.05.001

zbMATH Keywords

support vector machinesequence similarityfamily classificationprobabilistic suffix tree

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Dynamic programming (90C39)

Recommendations

• Advances in Intelligent Data Analysis VI
• SVM-BALSA: Remote homology detection based on Bayesian sequence alignment
• PSIST: a scalable approach to indexing protein structures using suffix trees
• A feature vector integration approach for a generalized support vector machine pairwise homology algorithm
• A protein structural classes prediction method based on PSI-BLAST profile

Cites Work

• Advances in Intelligent Data Analysis VI
• Algorithms on Strings, Trees and Sequences

Cited In (3)

• Advances in Intelligent Data Analysis VI
• PSIST: a scalable approach to indexing protein structures using suffix trees
• SVM-BALSA: Remote homology detection based on Bayesian sequence alignment

Uses Software

• PSI-BLAST
• BLAST

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