SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic \(K\)-nearest neighbor (ET-KNN) algorithm

DOI10.1016/j.jtbi.2009.08.004zbMath1403.92063OpenAlexW1999080365WikidataQ51801875 ScholiaQ51801875MaRDI QIDQ1628874

Shengjiao Cao, Yan-Da Li, Pu-Feng Du

Publication date: 11 December 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.08.004

zbMATH Keywords

chloroplast proteomeover-estimated performanceredundancy datasetsub-subcellular localization

Mathematics Subject Classification ID

Nonnumerical algorithms (68W05) Biochemistry, molecular biology (92C40) Plant biology (92C80)

Related Items (13)

Alignment free comparison: similarity distribution between the DNA primary sequences based on the shortest absent word ⋮ Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning ⋮ Predicting Golgi-resident protein types using pseudo amino acid compositions: approaches with positional specific physicochemical properties ⋮ Robust feature generation for protein subchloroplast location prediction with a weighted GO transfer model ⋮ Some remarks on protein attribute prediction and pseudo amino acid composition ⋮ Predicting protein sub-Golgi locations by combining functional domain enrichment scores with pseudo-amino acid compositions ⋮ CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition ⋮ Protein space: a natural method for realizing the nature of protein universe ⋮ \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites ⋮ Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions ⋮ Alignment free comparison: \(k\) word voting model and its applications ⋮ Prediction of Golgi-resident protein types using general form of Chou's pseudo-amino acid compositions: approaches with minimal redundancy maximal relevance feature selection ⋮ SubChlo

Uses Software

• Cell-PLoc
• PseAAC
• Nuc-ploc
• Cd-hit
• UniProt
• ESLpred
• Euk-PLoc
• LOCSVMPSI
• Euk-mPLoc
• Hum-mPLoc
• Hum-PLoc
• WoLF PSORT
• Esub8

Cites Work

• Unnamed Item
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

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