Fatgraph models of proteins

DOI10.1002/cpa.20340zbMath1194.92028arXiv0902.1025OpenAlexW2009419855MaRDI QIDQ3588800

Michael Knudsen, Jørgen Ellegaard Andersen, Carsten Wiuf, Robert C. Penner

Publication date: 10 September 2010

Published in: Communications on Pure and Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0902.1025

Mathematics Subject Classification ID

Applications of graph theory (05C90) Computing methodologies and applications (68U99) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Related Items (13)

Statistics of topological RNA structures ⋮ A topological framework for signed permutations ⋮ Topological language for RNA ⋮ Topological classification and enumeration of RNA structures by genus ⋮ Shapes of topological RNA structures ⋮ Enumeration of chord diagrams on many intervals and their non-orientable analogs ⋮ Generation of RNA pseudoknot structures with topological genus filtration ⋮ Skeletal configurations of ribbon trees ⋮ Fatgraph models of RNA structure ⋮ Knot theory in understanding proteins ⋮ Moduli spaces and macromolecules ⋮ The block spectrum of RNA pseudoknot structures ⋮ On RNA-RNA interaction structures of fixed topological genus

Uses Software

• UniProt

Cites Work

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• Perturbative series and the moduli space of Riemann surfaces
• Quantum field theory techniques in graphical enumeration
• Intersection theory on the moduli space of curves and the matrix Airy function
• Spaces of RNA secondary structures
• Combinatorial Miller-Morita-Mumford classes and Witten cycles
• Random forests

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