Fatgraph models of RNA structure

DOI10.1515/MLBMB-2017-0001MaRDI QIDQ523931zbMATHOpenAlexWikidataFDO

Authors Reza Rezazadegan, Christian M. Reidys, Fenix W. D. Huang

Publication date 25 April 2017

Published in Molecular Based Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/mlbmb-2017-0001

zbMATH Keywords

genusRNAfatgraphcontext free grammarpseudoknot

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 3675903 (Why is no real title available?)
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• Fatgraph models of proteins
• Graphs on surfaces and their applications. Appendix by Don B. Zagier
• Large-\(N\) random matrices for RNA folding
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• RNA folding and large \(N\) matrix theory
• RNA secondary structure: a complete mathematical analysis
• RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties
• Spaces of RNA secondary structures
• The arithmetic topology of genetic alignments
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• Tree adjoining grammars for RNA structure prediction

Cited in

(2)

• Topological language for RNA
• Fatgraph models of proteins

Describes a project that uses

Uses Software

• TPstructure

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