The arithmetic topology of genetic alignments

DOI10.1007/S00285-023-01868-XMaRDI QIDQ2684033zbMATH OpenOpenAlexFDO

Authors Andrei C. Bura, Qijun He, Fenix W. D. Huang, Christian M. Reidys, Christopher L. Barrett

Publication date 15 February 2023

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/2210.15029

zbMATH Keywords

\(k\)-stancesHamming distancephylogenysequence dissimilarityweighted algebraic homologyweighted simplicial complexes

Mathematics Subject Classification ID

Combinatorial aspects of simplicial complexes (05E45) Homology and cohomology theories in algebraic topology (55Nxx) Taxonomy, cladistics, statistics in mathematical biology (92B10) Genetics and epigenetics (92D10)

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Cites work

• A Remark on Finitely Generated Modules
• Branch and bound algorithms to determine minimal evolutionary trees
• Computing persistent homology
• Distances and volumina for graphs
• Geometry of cuts and metrics
• scientific article; zbMATH DE number 8209 (Why is no real title available?)
• scientific article; zbMATH DE number 7334002 (Why is no real title available?)
• Levenshtein Distance, Sequence Comparison and Biological Database Search
• Simplical Geometry and Transportation Polytopes
• Topology of viral evolution
• Weighted persistent homology

Cited in

(8)

• Genomic tableaux and combinatorial K-theory
• scientific article; zbMATH DE number 2040657 (Why is no real title available?)
• Topological Data Analysis for Genomics and Evolution
• Category theory for genetics. I: Mutations and sequence alignments
• scientific article; zbMATH DE number 2103892 (Why is no real title available?)
• Quantifying genetic innovation: mathematical foundations for the topological study of reticulate evolution
• Fatgraph models of RNA structure
• On the minimum number of topologies explaining a sample of DNA sequences

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