Knot theory in understanding proteins

DOI10.1007/S00285-011-0488-3MaRDI QIDQ694699zbMATH OpenOpenAlexWikidataFDO

Authors Rama Mishra, Shantha Bhushan

Publication date 13 December 2012

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-011-0488-3

zbMATH Keywords

backboneprotein folding

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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• scientific article; zbMATH DE number 4094392
• Dodging the crisis of folding proteins with knots
• Unknots and molecular biology
• Entangled proteins: knots, slipknots, links, and lassos

Cites work

• A matrix for computing the Jones polynomial of a knot
• A model of DNA knotting and linking
• Does the Jones Polynomial Detect Unknottedness?
• Fatgraph models of proteins
• Five lectures on Khovanov homology
• scientific article; zbMATH DE number 3530652 (Why is no real title available?)
• scientific article; zbMATH DE number 1877246 (Why is no real title available?)
• scientific article; zbMATH DE number 2120368 (Why is no real title available?)
• scientific article; zbMATH DE number 791397 (Why is no real title available?)
• Khovanov homology is an unknot-detector
• Knots
• Lifting the curtain: Using topology to probe the hidden action of enzymes
• Protein knots and fold complexity: some new twists
• Quantum field theory and the Jones polynomial
• Self-Linking and the Gauss Integral in Higher Dimensions
• State models and the Jones polynomial
• The writhe of open and closed curves
• The Writhing Number of a Space Curve
• Tying down open knots: a statistical method for identifying open knots with applications to proteins
• Unknotting genus one knots

Cited in

(7)

• A knot polynomial invariant for analysis of topology of RNA stems and protein disulfide bonds
• Knot theory for proteins: Gauss codes, quandles and bondles
• Topological linking and entanglement in proteins
• Intrinsic linking and knotting are arbitrarily complex
• More knots in knots: a study of classical knot diagrams
• Linking number of monotonic cycles in random book embeddings of complete graphs
• Protein folding invariants

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