Topological classification and enumeration of RNA structures by genus

DOI10.1007/S00285-012-0594-XzbMATH Open1335.92068OpenAlexW2029235587WikidataQ44396933 ScholiaQ44396933MaRDI QIDQ378306FDOQ378306

Authors: J. E. Andersen, Christian M. Reidys, Robert Penner, Michael S. Waterman 

Publication date: 11 November 2013

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-012-0594-x

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zbMATH Keywords

generating functiongenusneutral networkPenner-Strebel decompositionRNA structuretopological surface

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cites Work

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Cited In (18)

• Generation of RNA pseudoknot structures with topological genus filtration
• Topological recursion for Gaussian means and cohomological field theories
• On RNA-RNA interaction structures of fixed topological genus
• Genus Ranges of Chord Diagrams
• Models of discretized moduli spaces, cohomological field theories, and Gaussian means
• Loop homology of bi-secondary structures
• Regular simple queues of protein contact maps
• Moduli spaces and macromolecules
• Statistics of topological RNA structures
• Shapes of topological RNA structures
• Topological language for RNA
• Topological Classification of RNA Structures via Intersection Graph
• Loop homology of bi-secondary structures. II
• Spaces of RNA secondary structures
• On a uniformly random chord diagram and its intersection graph
• Plane permutations and applications to a result of Zagier-Stanley and distances of permutations
• Enumeration of 4-regular one-face maps
• The block spectrum of RNA pseudoknot structures

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