Combinatorial design of pseudoknot RNA

DOI10.1016/j.aam.2008.06.003zbMath1156.92018OpenAlexW2003890447WikidataQ56266973 ScholiaQ56266973MaRDI QIDQ1004248

Christian M. Reidys, Emma Yu Jin

Publication date: 2 March 2009

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.aam.2008.06.003

zbMATH Keywords

generating functionsingularity analysisstack\(k\)-noncrossing diagramtransfer theoremcore-structure

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Asymptotic enumeration (05A16) Computational methods for problems pertaining to biology (92-08)

Related Items (9)

Local connectivity of neutral networks ⋮ Irreducibility in RNA structures ⋮ Combinatorial analysis of interacting RNA molecules ⋮ Combinatorics of RNA-RNA interaction ⋮ RNA pseudoknot structures with arc-length \(\geq 3\) and stack-length \(\geq \sigma \) ⋮ Moduli spaces and macromolecules ⋮ Statistics of canonical RNA pseudoknot structures ⋮ Stacks in canonical RNA pseudoknot structures ⋮ On the decomposition of \(k\)-noncrossing RNA structures

Cites Work

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• Generic properties of combinatory maps: Neutral networks of RNA secondary structures
• Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
• Combinatorics of RNA structures with pseudoknots
• Crossings and nestings of matchings and partitions
• Register Allocation for Unary–Binary Trees
• Computation of Generating Functions for Biological Molecules
• Combinatorics of RNA Hairpins and Cloverleaves
• AN EXAMPLE IN THE THEORY OF THE SPECTRUM OF A FUNCTION

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