Structural Alignment of Pseudoknotted RNA

DOI10.1007/11732990_13MaRDI QIDQ3596282zbMATH OpenOpenAlexFDO

Authors Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna

Publication date 30 August 2007

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11732990_13

zbMATH Keywords

non-coding RNAeukaryotic pseudoknotsoptimum structural alignmentpseudoknotted RNA

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cited in

(11)

• Detecting conserved secondary structures in RNA molecules using constrained structural alignment
• Computational Science – ICCS 2005
• Pseudoknot-generating operation
• PSSMTS: Position specific scoring matrices on tree structures
• Combinatorial design of pseudoknot RNA
• Seed-Based Exclusion Method for Non-coding RNA Gene Search
• Classifying RNA pseudoknotted structures
• Algorithms and Computation
• DARN! A weighted constraint solver for RNA motif localization
• Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots
• Profiling and Searching for RNA Pseudoknot Structures in Genomes

Describes a project that uses

Uses Software

• Rfam

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