Structural Alignment of Pseudoknotted RNA

DOI10.1007/11732990_13zbMATH Open1302.92099OpenAlexW2166707334MaRDI QIDQ3596282FDOQ3596282

Authors: Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna 

Publication date: 30 August 2007

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/11732990_13

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zbMATH Keywords

non-coding RNAeukaryotic pseudoknotsoptimum structural alignmentpseudoknotted RNA

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cited In (11)

• PSSMTS: Position specific scoring matrices on tree structures
• Profiling and Searching for RNA Pseudoknot Structures in Genomes
• Detecting conserved secondary structures in RNA molecules using constrained structural alignment
• Computational Science – ICCS 2005
• Classifying RNA pseudoknotted structures
• Algorithms and Computation
• Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots
• DARN! A weighted constraint solver for RNA motif localization
• Pseudoknot-generating operation
• Combinatorial design of pseudoknot RNA
• Seed-Based Exclusion Method for Non-coding RNA Gene Search

Uses Software

• Rfam

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