An integer linear programming problem for RNA structures

MaRDI QIDQ4918921zbMATH OpenFDO

Authors G. H. Shirdel, N. Kahkeshani

Publication date 7 May 2013

Full work available at URL http://www.m-hikari.com/ams/ams-2012/ams-53-56-2012/index.html

zbMATH Keywords

RNA structureinteger programming problemcore structure

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Integer programming (90C10)

Recommendations

• A zero one programming model for RNA structures with arc-length \(\geq 4\)
• RNA pseudoknot structures with arc-length \(\geq 3\) and stack-length \(\geq \sigma \)
• Combinatorial design of pseudoknot RNA
• Rapid dynamic programming algorithms for RNA secondary structure
• Linear trees and RNA secondary structure

Cited in

(2)

• scientific article; zbMATH DE number 7559176 (Why is no real title available?)
• A zero one programming model for RNA structures with arc-length \(\geq 4\)

Describes a project that uses

Uses Software

• Maple

This page was built for publication: An integer linear programming problem for RNA structures

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4918921)