Spaces of RNA secondary structures

DOI10.1006/AIMA.1993.1039MaRDI QIDQ1312845zbMATH OpenOpenAlexFDO

Authors Michael S. Waterman, Robert Penner

Publication date 10 February 1994

Published in Advances in Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1006/aima.1993.1039

zbMATH Keywords

posetssphericitytrain tracksgeometric realizationsbond picturesclasses of rooted treesisomorphisms of posetslinear macromoleculespartially ordered sets of macromoleculessecondary structure of RNAsimplicial decomposition of a topological spacetopological spheresTeichmüller theory

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Partial orders, general (06A06) General topology of complexes (57Q05) Teichmüller theory for Riemann surfaces (30F60) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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Cited in

(32)

• Convex polytopes and enumeration
• Generation of RNA pseudoknot structures with topological genus filtration
• Kontsevich-Witten model from \(2+1\) gravity: new exact combinatorial solution
• Topological classification and enumeration of RNA structures by genus
• Pretopological spaces as a classification tool for RNAs represented as a succession
• On the decomposition of \(k\)-noncrossing RNA structures
• Reidys' and Stadler's metrics for RNA contact structures
• A type-B associahedron.
• On RNA-RNA interaction structures of fixed topological genus
• Loop homology of bi-secondary structures
• Fatgraph models of proteins
• Posets and spaces of \(k\)-noncrossing RNA structures
• RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties
• Moduli spaces and macromolecules
• Local connectivity of neutral networks
• Asymptotic enumeration of RNA structures with pseudoknots
• A bijection for tricellular maps
• Statistics of topological RNA structures
• Shapes of topological RNA structures
• The rainbow spectrum of RNA secondary structures
• Combinatorics of RNA secondary structures
• Topological language for RNA
• Enumeration of chord diagrams on many intervals and their non-orientable analogs
• General combinatorics of RNA secondary structure
• Irreducibility in RNA structures
• Efficient pattern matching for RNA secondary structures
• Combinatorial design of pseudoknot RNA
• Loop homology of bi-secondary structures. II
• Combinatorics of RNA structures with pseudoknots
• scientific article; zbMATH DE number 1086865 (Why is no real title available?)
• The block spectrum of RNA pseudoknot structures
• Fatgraph models of RNA structure

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