Shapes of topological RNA structures

DOI10.1016/j.mbs.2015.10.004zbMath1364.92029arXiv1403.2908OpenAlexW2963708209WikidataQ45020806 ScholiaQ45020806MaRDI QIDQ899333

Christian M. Reidys, Fenix W. D. Huang

Publication date: 28 December 2015

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1403.2908

zbMATH Keywords

treegenerating functiongenusuniform generationRNA shape

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Related Items

Statistics of topological RNA structures ⋮ Posets and Spaces of $k$-Noncrossing RNA Structures ⋮ HYPERMATRIX ALGEBRA AND IRREDUCIBLE ARITY IN HIGHER-ORDER SYSTEMS: CONCEPTS AND PERSPECTIVES ⋮ Loop homology of bi-secondary structures ⋮ Moduli spaces and macromolecules ⋮ The block spectrum of RNA pseudoknot structures ⋮ Loop homology of bi-secondary structures. II ⋮ On RNA-RNA interaction structures of fixed topological genus

Cites Work

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• Topological classification and enumeration of RNA structures by genus
• A new combinatorial identity for unicellular maps, via a direct bijective approach
• Spaces of RNA secondary structures
• The Euler characteristic of the moduli space of curves
• Generation of RNA pseudoknot structures with topological genus filtration
• The chromatic polynomial of fatgraphs and its categorification
• Fatgraph models of proteins
• Boltzmann Samplers for the Random Generation of Combinatorial Structures
• Exact-size Sampling for Motzkin Trees in Linear Time via Boltzmann Samplers and Holonomic Specification
• RNA folding and large \(N\) matrix theory