An efficient strategy for identifying essential proteins based on homology, subcellular location and protein-protein interaction information

DOI10.3934/MBE.2022296MaRDI QIDQ2686772zbMATH OpenOpenAlexFDO

Authors Yingchun Luo, Meiping Jiang, Dong-Jie Wu, Wang Zhang, Wei Yan, Bihai Zhao, Zhi-Hong Zhang

Publication date 28 February 2023

Published in Mathematical Biosciences and Engineering (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.3934/mbe.2022296

zbMATH Keywords

essential proteinhomology informationmultiple biological informationnon-negative matrix symmetric tri-factorizationprotein-protein interactionsubcellular location information

Mathematics Subject Classification ID

Cell biology (92C37) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Cites work

• Centers of complex networks
• Data representation using robust nonnegative matrix factorization for edge computing
• SNFM: a semi-supervised NMF algorithm for detecting biological functional modules

Cited in

(1)

• Identification of Essential Proteins Using Induced Stars in Protein–Protein Interaction Networks

Describes a project that uses

Uses Software

• UniProt

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