Cited in
(99)- RNA bioinformatics
- Comparative gene finding. Models, algorithms and implementation
- BMC3C
- MetaCoAG: binning metagenomic contigs via composition, coverage and assembly graphs
- AMBER
- onechannelgui
- JIGSAW
- SCOOP
- SLAM
- Evigan
- CompaRNA
- AVID
- Assemble
- CentroidAlign
- CENTROIDFOLD
- ASPIC
- ARB
- COFOLD
- AstexViewer
- ASPicDB
- DAFS
- ASTALAVISTA
- BioMart
- DARNED
- Oases
- Exogean
- EMIRGE
- ExpEdit
- IPknot
- jViz.Rna
- GeneMark
- RNAmute
- Apollo
- Minimus
- Artemis
- PicXAA-R
- PETfold
- PETcofold
- NGS-Trex
- PPfold
- CEGMA
- RactIP
- PIntron
- RNAexinv
- RNAfbinv
- RNAalifold
- R-Coffee
- PARalyzer
- R-CHIE
- PatSearch
- R4RNA
- OligoWalk
- R2R
- RNAG
- OptiRNAi
- RNAspa
- RNASTAR
- EasyGene
- RILogo
- ECgene
- RNA2D3D
- PolyA_DB
- RNAplex
- PCAP
- REDItools
- RSeQC
- PredGPI
- RAST
- SeqMap
- RIPSeeker
- GeneSplicer
- GBrowse
- GRAIL
- PipMaker
- JBROWSE
- MAKER-P
- MAKER
- MetaVelvet
- MetaGeneAnnotator
- Meta-IDBA
- RepeatMasker
- PHRAP
- RePS
- SortMeRNA
- TagCleaner
- SPEPlip
- WAR
- MetaProb
- CheckM
- GraphBin
- MetaCoAG
- METAMVGL
- metaSPAdes
- metaFlye
- Centrifuge
- oblr
- SolidBin
- Numericalization of the self adaptive spectral rotation method for coding region prediction
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
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