BioModels
From MaRDI portal
Cited in
(only showing first 100 items - show all)- rsconnect
- CoRC
- MapleBinomials
- Bio-PEPA
- PNML
- REDLOG
- PetriNets
- A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
- Symbolic versus numerical computation and visualization of parameter regions for multistationarity of biological networks
- OptiML
- CellML
- A comparative analysis of kinetic models of erythrocyte glycolysis
- The markup is the model: reasoning about systems biology models in the semantic web era
- PoCaB
- Binomials.m2
- sbtoolbox
- Libxml2
- Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
- MetaCyc
- TRANSPATH
- Algorithmic reduction of biological networks with multiple time scales
- Paramotopy
- SBML to bond graphs: from conversion to composition
- Ginsim
- An extension of ERODE to reduce Boolean networks by backward Boolean equivalence
- Dynamic publication media with the COPASI R connector (CoRC)
- ProjectionCAD
- BIOCHAM
- Celldesigner
- PEPA
- Bio-PEPA: A framework for the modelling and analysis of biological systems
- iDynoR
- Generalizing Gillespie's direct method to enable network-free simulations
- SESSL
- KEGG2SBML
- BioSPI
- A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development
- COPASI
- BlenX
- libSBML
- Dynamical properties of discrete reaction networks
- Metatool
- SBMLsimulator
- SakerGrid
- PySB
- SloppyCell
- KEGG
- KEGGtranslator
- JSBML
- Ernest
- CoNtRol
- Model-based selection of the robust JAK-STAT activation mechanism
- Glycolysis in saccharomyces cerevisiae: algorithmic exploration of robustness and origin of oscillations
- CLPGUI
- Reactome
- On enumerating minimal siphons in Petri nets using CLP and SAT solvers: theoretical and practical complexity
- Bio-SPICE
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- Systems Biology: The Next Frontier for Bioinformatics
- ERODE
- NFsim
- Analysis of reaction network systems using tropical geometry
- crnpy
- Robust modelling, measurement and analysis of human and animal metabolic systems
- Bio-PEPA with Events
- JSim
- MetaFork
- SuBliMinaL
- ConvAn
- SOSlib
- tellurium
- SpaceScanner
- MTT
- Design space toolbox
- STOCHSIM
- CRN++
- MESSI
- Computational challenges in systems biology
- TRuML
- Spatkin
- CompuCell3D
- MOCCASIN
- libRoadRunner
- PyDREAM
- KappaTools
- SimpleSBML
- Expression2Kinases
- PyBoolNet
- SBRML
- PottersWheel
- cPath
- Dizzy
- Inferring reaction systems from ordinary differential equations
- A geometric approach for analyzing parametric biological systems by exploiting block triangular structure
- A case study on the parametric occurrence of multiple steady states
- polco
- MEMo
- GNA
- Modelling biological compartments in bio-PEPA
- The \textsc{SDEval} benchmarking toolkit
This page was built for software: BioModels
