swMATH12253MaRDI QIDQ24184FDOQ24184
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Official website: https://academic.oup.com/bioinformatics/article/22/24/3067/208398
Cited In (only showing first 100 items - show all)
- The union between structural and practical identifiability makes strength in reducing oncological model complexity: a case study
- A computational model of auxin and pH dynamics in a single plant cell
- Relating PDEs in cylindrical coordinates and CTMCs with levels of concentration
- Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
- Gene regulatory networks. Methods and protocols
- Distributed computation with continual population growth
- Probabilistic approximations of ODEs based bio-pathway dynamics
- Modelling co-transcriptional cleavage in the synthesis of yeast pre-rRNA
- From quantitative SBML models to Boolean networks
- Model of colonic inflammation: immune modulatory mechanisms in inflammatory bowel disease
- Component-based construction of bio-pathway models: the parameter estimation problem
- Condor-COPASI
- Computational cell biology. Methods and protocols
- Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
- Springer Handbook of Bio-/Neuroinformatics
- Modeling the effect of Tat inhibitors on HIV latency
- Stochastic modelling of the eukaryotic heat shock response
- A logic of behaviour in context
- Stability and phase transitions in a mathematical model of Duchenne muscular dystrophy
- Computing difference abstractions of linear equation systems
- Analysing biochemical oscillation through probabilistic model checking
- Computational biology analysis of platelet signaling reveals roles of feedbacks through phospholipase C and inositol 1,4,5-trisphosphate 3-kinase in controlling amplitude and duration of calcium oscillations
- Stochastic modelling for systems biology.
- A mathematical model representing cellular immune development and response to \textit{Salmonella} of chicken intestinal tissue
- A geometric method for model reduction of biochemical networks with polynomial rate functions
- The FRiND model: a mathematical model for representing macrophage plasticity in muscular dystrophy pathogenesis
- Novel global sensitivity analysis methodology accounting for the crucial role of the distribution of input parameters: application to systems biology models
- Methods of model reduction for large-scale biological systems: a survey of current methods and trends
- Nonlinear and temporal multiscale dynamics of gene regulatory networks: a qualitative simulator
- Computational challenges in systems biology
- Modeling non-homologous end joining
- Discrete Modeling of Biochemical Signaling with Memory Enhancement
- Modularized smad-regulated TGF\(\beta \) signaling pathway
- A nonlinear mathematical model of cell-mediated immune response for tumor phenotypic heterogeneity
- The markup is the model: reasoning about systems biology models in the semantic web era
- ODE Analysis of Biological Systems
- Reaction network realizations of rational biochemical systems and their structural properties
- Insights into the dynamics of ligand-induced dimerisation via mathematical modelling and analysis
- Reconstructing the hidden states in time course data of stochastic models
- Metabolic rate constants: some computational aspects
- Stochastic rate parameter inference using the cross-entropy method
- BasiCO
- MobsPy
- StructuralIdentifiability.jl
- CoRC
- Dynamical Systems Toolbox
- iBioSim
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- MobsPy: a meta-species language for chemical reaction networks
- BSim
- Computational software
- Structure exploiting parameter estimation and optimum experimental design methods and applications in microbial enhanced oil recovery
- SIAN
- Misinterpretation risks of global stochastic optimisation of kinetic models revealed by multiple optimisation runs
- The Java environment for nature-inspired approaches (JENA): a workbench for biocomputing and biomodelling enthusiasts
- Mathematical models for immunology: current state of the art and future research directions
- Accuracy analysis of hybrid stochastic simulation algorithm on linear chain reaction systems
- Dynamic publication media with the COPASI R connector (CoRC)
- Glycolysis in saccharomyces cerevisiae: algorithmic exploration of robustness and origin of oscillations
- Computational heuristics for simplifying a biological model
- DYVIPAC
- ParameterEstimation.jl
- How Petri nets might enhance your systems biology toolkit
- Computational modeling of quiescent platelet energy metabolism in the context of whole-body glucose turnover
- Activation of contact pathway of blood coagulation on the lipopolysaccharide aggregates
- PyCont
- Systems Biology: The Next Frontier for Bioinformatics
- Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach
- HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
- Bio-PEPA
- DSSZ-MC
- SCAMP
- CellML
- PoCaB
- PySCeS
- StochKit
- WGCNA
- sbtoolbox
- Stella
- BioStream
- E-CELL
- GEPASI
- MetaCyc
- MEIGO
- BioNetGen
- DAISY
- DBSolve
- BIOCHAM
- Celldesigner
- Casaal
- MoMo
- AMIGO
- BlenX
- PAREMERA
- LBS
- SynTReN
- libSBML
- BioGRID
- BioModels
- PySB
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