Stochastic modelling of the eukaryotic heat shock response

DOI10.1016/J.JTBI.2010.04.029MaRDI QIDQ1720104zbMATH OpenOpenAlexWikidataFDO

Authors Andrzej Mizera, Barbara Gambin

Publication date 12 February 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2010.04.029

zbMATH Keywords

Markov chainstationary distributionstochastic modelcomputer simulationsGillespie algorithm

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Cell biology (92C37)

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Cites work

• scientific article; zbMATH DE number 54039 (Why is no real title available?)
• A first course in stochastic models.
• Computational heuristics for simplifying a biological model
• Discrete-time stochastic modeling and simulation of biochemical networks
• Finding Groups in Data
• Improved Bounds for Mixing Rates of Markov Chains and Multicommodity Flow
• Markov Chains
• Mathematical modeling of heat shock protein synthesis in response to temperature change
• Simulating, Analyzing, and Animating Dynamical Systems
• Stochastic effects and bistability in T cell receptor signaling
• Stochastic modelling for systems biology.

Cited in

(6)

• Reaction System Models for the Heat Shock Response
• scientific article; zbMATH DE number 2050734 (Why is no real title available?)
• Mathematical modeling of heat shock protein synthesis in response to temperature change
• Mathematical modeling and analysis of the heat shock protein response during thermal stress in fish and HeLa cells
• A combined modelling and experimental study of heat shock factor SUMOylation in response to heat shock
• Biologically sound formal model of Hsp70 heat induction

Describes a project that uses

Uses Software

• clusfind
• COPASI
• XPPAUT
• MCQueue
• AUTO-86
• AUTO
• R

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