XPPAUT

swMATH5543MaRDI QIDQ17682FDOQ17682

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Official website: http://www.math.pitt.edu/~bard/xpp/xpp.html

Source code repository: https://github.com/Ermentrout/xppaut

Described by source

• Simulating, Analyzing, and Animating Dynamical Systems

Cited In (only showing first 100 items - show all)

• MATCONT
• A model of gene expression based on random dynamical systems reveals modularity properties of gene regulatory networks
• Isochronicity-induced bifurcations in systems of weakly dissipative coupled oscillators
• Synchronized Activity and Loss of Synchrony Among Heterogeneous Conditional Oscillators
• A predator-prey model with a Holling type I functional response including a predator mutual interference
• Stochasticity and bifurcations in a reduced model with interlinked positive and negative feedback loops of CREB1 and CREB2 stimulated by 5-HT
• Asymptotic methods for reaction-diffusion systems: past and present
• Dynamics of coupled cell networks: synchrony, heteroclinic cycles and inflation
• Turing-Hopf instability in biochemical reaction networks arising from pairs of subnetworks
• Mathematical frameworks for oscillatory network dynamics in neuroscience
• Mean-field equations for stochastic firing-rate neural fields with delays: derivation and noise-induced transitions
• Numerical bifurcation analysis of delay differential equations using DDE-BIFTOOL
• Computation of the Phase Response Curve: A Direct Numerical Approach
• New findings on the dynamics of HIV and TB coinfection models
• A mathematical model of a midbrain dopamine neuron identifies two slow variables likely responsible for bursts evoked by SK channel antagonists and terminated by depolarization block
• Conditions for multi-functionality in a rhythm generating network inspired by turtle scratching
• Effect of light on the growth of non-nitrogen-fixing and nitrogen-fixing phytoplankton in an aquatic system
• A systematic survey of the response of a model NF-\(\kappa\)B signalling pathway to \(\mathrm{TNF}\alpha\) stimulation
• Reduced dynamics and symmetric solutions for globally coupled weakly dissipative oscillators
• Heteroclinic ratchets in networks of coupled oscillators
• Relaxation oscillations in spruce-budworm interactions
• Analysis of predator-prey models with continuous threshold harvesting
• Analytic approximations of statistical quantities and response of noisy oscillators
• A low-dimensional model of binocular rivalry using winnerless competition
• Synapses as stochastic concurrent systems
• Symmetric bursting behaviors in the generalized FitzHugh-Nagumo model
• Geometric singular perturbation analysis of an autocatalator model
• Mathematical modeling of a minimal protocell with coordinated growth and division
• Intraguild predation promotes complex alternative states along a productivity gradient
• Understanding cyclical thrombocytopenia: a mathematical modeling approach
• Dynamics of the interlocked positive feedback loops explaining the robust epigenetic switching in \textit{Candida albicans}
• Predator-prey dynamics with square root functional responses
• The dynamics underlying pseudo-plateau bursting in a pituitary cell model
• Stability and synchronization of a ring of identical cells with delayed coupling
• Within-burst synchrony changes for coupled elliptic bursters
• Mitotic exit in two dimensions
• Noise-induced behaviors in neural mean field dynamics
• Temporal patterns of dispersal-induced synchronization in population dynamics
• How predator functional responses and Allee effects in prey affect the paradox of enrichment and population collapses
• SlideCont
• CANDYS/QA
• AUTO-86
• AUTO2000
• AUTO-07P
• MatContM
• COCO
• CL_MATCONTL
• DSTool
• PyDSTool
• CL_MATCONT
• Optimal HIV treatment by maximising immune response
• LOCBIF
• pde2path
• Dynamics
• Spikenet
• CASPAR
• libSBML
• TC-HAT
• JSBML
• Fireflies
• crntwin
• HomCont
• galepu
• Torcont
• MINMOD
• BAL
• A simple time delay model for eukaryotic cell cycle
• Giant squid-hidden canard: the 3D geometry of the Hodgkin-Huxley model
• Rallpacks
• CkAnalytic
• booleannet
• Chronux
• Brian
• SALib
• \textsc{BAL}: a library for the \textit{brute-force} analysis of dynamical systems
• SAAM II
• WinPP
• CEPAGE
• VCell
• XPPy
• Mathematical analysis and modeling of DNA segregation mechanisms
• Brain Dynamics Toolbox
• Tor
• mapfit
• Bifurcation to heteroclinic cycles and sensitivity in three and four coupled phase oscillators
• DChaos
• Chaos and generalised multistability in a mesoscopic model of the electroencephalogram
• Slow variable dominance and phase resetting in phantom bursting
• Mathematical models and software tools for the glucose\,-\,insulin regulatory system and diabetes: an overview
• Weak chimeras in minimal networks of coupled phase oscillators
• Canard Induced Mixed-Mode Oscillations in a Medial Entorhinal Cortex Layer II Stellate Cell Model
• On Nonlinear Dynamics of Predator-Prey Models with Discrete Delay
• A Computational and Geometric Approach to Phase Resetting Curves and Surfaces
• Neuronal Networks with Gap Junctions: A Study of Piecewise Linear Planar Neuron Models
• New features of the software M<scp>at</scp>C<scp>ont</scp>for bifurcation analysis of dynamical systems
• Fireflies: new software for interactively exploring dynamical systems using GPU computing
• Bifurcation Analysis of a Predator-Prey System with Nonmonotonic Functional Response
• Slowly Coupled Oscillators: Phase Dynamics and Synchronization
• Mathematical modelling of malaria with treatment
• First Liapunov coefficient for coupled identical oscillators. Application to coupled demand–supply model

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