Phase reduction and phase-based optimal control for biological systems: a tutorial
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Publication:1734634
DOI10.1007/s00422-018-0780-zzbMath1411.92122OpenAlexW2889667300WikidataQ91375719 ScholiaQ91375719MaRDI QIDQ1734634
Jeff Moehlis, Tim Matchen, Bharat Monga, Dan Wilson
Publication date: 27 March 2019
Published in: Biological Cybernetics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s00422-018-0780-z
Applications of optimal control and differential games (49N90) PDEs in connection with biology, chemistry and other natural sciences (35Q92) Systems biology, networks (92C42)
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Cites Work
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- Event-based minimum-time control of oscillatory neuron models
- Minimum energy desynchronizing control for coupled neurons
- Time optimal control of spiking neurons
- Charge-balanced spike timing control for phase models of spiking neurons
- Chemical oscillations, waves, and turbulence
- Mathematical foundations of neuroscience
- Nonlinear oscillations, dynamical systems, and bifurcations of vector fields
- Phase locking of biological clocks
- Isochrons and phaseless sets
- Patterns of phase compromise in biological cycles
- Elements of applied bifurcation theory.
- Phase resetting in medicine and biology. Stochastic modelling and data analysis
- Normally hyperbolic invariant manifolds in dynamical systems
- Weakly connected neural networks
- Phase model-based neuron stabilization into arbitrary clusters
- Optimal control formulation of pulse-based control using Koopman operator
- Spatiotemporal control to eliminate cardiac alternans using isostable reduction
- Greater accuracy and broadened applicability of phase reduction using isostable coordinates
- Locally optimal extracellular stimulation for chaotic desynchronization of neural populations
- Optimal phase control of biological oscillators using augmented phase reduction
- A model of desynchronizing deep brain stimulation with a demand-controlled coordinated reset of neural subpopulations
- Starting, stopping, and resetting biological oscillators: in search of optimum perturbations
- Phase-amplitude descriptions of neural oscillator models
- Phase-amplitude response functions for transient-state stimuli
- Constrained charge-balanced minimum-power controls for spiking neuron oscillators
- Isostables, isochrons, and Koopman spectrum for the action-angle representation of stable fixed point dynamics
- Improving the precision of noisy oscillators
- The parameterization method for invariant manifolds. III: Overview and applications
- Partial phase synchronization of neural populations due to random Poisson inputs
- Multiple pulse interactions and averaging in systems of coupled neural oscillators
- Extending Phase Reduction to Excitable Media: Theory and Applications
- A Fast Eulerian Approach for Computation of Global Isochrons in High Dimensions
- The Shape of Phase-Resetting Curves in Oscillators with a Saddle Node on an Invariant Circle Bifurcation
- Computation of Limit Cycles and Their Isochrons: Fast Algorithms and Their Convergence
- Optimal Chaotic Desynchronization for Neural Populations
- Global Isochrons and Phase Sensitivity of Bursting Neurons
- An Energy-Optimal Methodology for Synchronization of Excitable Media
- On the use of Fourier averages to compute the global isochrons of (quasi)periodic dynamics
- Continuation-based Computation of Global Isochrons
- Engineering Complex Dynamical Structures: Sequential Patterns and Desynchronization
- Simulating, Analyzing, and Animating Dynamical Systems
- Forward-Time and Backward-Time Isochrons and Their Interactions
- Frequency Plateaus in a Chain of Weakly Coupled Oscillators, I.
- A Computational and Geometric Approach to Phase Resetting Curves and Surfaces
- Higher order approximation of isochrons
- Plane Wave Solutions to Reaction-Diffusion Equations
- Stability, Instability and Chaos
- Phase Equations for Relaxation Oscillators
- An Operational Definition of Phase Characterizes the Transient Response of Perturbed Limit Cycle Oscillators
- Solving Winfree's puzzle: The isochrons in the FitzHugh-Nagumo model
- Continuous-time control of alternans in long Purkinje fibers
- Phase-amplitude reduction of transient dynamics far from attractors for limit-cycling systems
- Global computation of phase-amplitude reduction for limit-cycle dynamics
- Appropriate initial conditions for asymptotic descriptions of the long term evolution of dynamical systems
- On the Phase Reduction and Response Dynamics of Neural Oscillator Populations
- Phase Portraits of Planar Vector Fields: Computer Proofs
- Phase Resetting in an Asymptotically Phaseless System: On the Phase Response of Limit Cycles Verging on a Heteroclinic Orbit
- The geometry of biological time.