XPPAUT

swMATH5543MaRDI QIDQ17682FDOQ17682

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Source code repository: https://github.com/Ermentrout/xppaut

Described by source

• Simulating, Analyzing, and Animating Dynamical Systems

Cited In (only showing first 100 items - show all)

• Coexistence in the chemostat as a result of metabolic by-products
• Control of planar Bautin bifurcation
• Winding numbers and average frequencies in phase oscillator networks
• Alignment and rheo-oscillator criteria for sheared nematic polymer films in the monolayer limit
• Dynamics near the product of planar heteroclinic attractors
• From plateau to pseudo-plateau bursting: making the transition
• Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics
• Title not available (Why is that?)
• Bifurcations and chaos in a two-dimensional discrete Hindmarsh-Rose model
• Hopf bifurcation in a system of two coupled advertising oscillators
• Bifurcation analysis of bursting solutions of two Hindmarsh-Rose neurons with joint electrical and synaptic coupling
• Complex behaviour in a dengue model with a seasonally varying vector population
• A Minimal Model of a Central Pattern Generator and Motoneurons for Insect Locomotion
• Exploring action potential initiation in neurons exposed to DC electric fields through dynamical analysis of conductance-based model
• Pattern Formation in a Network of Excitatory and Inhibitory Cells with Adaptation
• Dynamics of infection with multiple transmission mechanisms in unmanaged/managed animal populations
• Dynamics and Physiological Roles of Stochastic Firing Patterns Near Bifurcation Points
• Mixed mode oscillations as a mechanism for pseudo-plateau bursting
• Synchronization of Oscillatory Gene Networks
• Pacemaker dynamics in the full Morris-Lecar model
• Finding all steady state solutions of chemical kinetic models
• Different types of bursting calcium oscillations in non-excitable cells
• A size-dependent nonlinear microbeam model based on the micropolar elasticity theory
• Corrigendum to ``Intraguild predation promotes complex alternative states along a productivity gradient
• Density-dependence as a size-independent regulatory mechanism
• Symmetric fold/super-Hopf bursting, chaos and mixed-mode oscillations in Pernarowski model of pancreatic beta-cells
• The effect of the Holling type II functional response on apparent competition
• When can dispersal synchronize populations?
• Spatial pattern formation in reaction-diffusion models: a computational approach
• A reduced mathematical model of the acute inflammatory response. II: Capturing scenarios of repeated endotoxin administration
• Resetting behavior in a model of bursting in secretory pituitary cells: distinguishing plateaus from pseudo-plateaus
• Analysis of a dengue disease model with nonlinear incidence
• Calcium Oscillations and Membrane Transport: The Importance of Two Time Scales
• Towards an automated reduction method for polynomial ODE models of biochemical reaction systems
• Probabilistic Foundations of Spatial Mean-Field Models in Ecology and Applications
• The dynamics of a forced coupled network of active elements
• Bistability analysis of an apoptosis model in the presence of nitric oxide
• Collocation Techniques for Structured Populations Modeled by Delay Equations
• Inferring gene regulatory networks from time-ordered gene expression data of bacillus subtilis using differential equations
• Modelling instability \(ABC\) flow using a mode interaction between steady and Hopf bifurcations with rotational symmetries of the cube
• Regular bursting emerging from coupled chaotic neurons
• Numerical methods for mixed-integer optimal control problems
• Stability analysis of a Komarova type model for the interactions of osteoblast and osteoclast cells during bone remodeling
• Number and Stability of Relaxation Oscillations for Predator-Prey Systems with Small Death Rates
• Multiple timescales, mixed mode oscillations and canards in models of intracellular calcium dynamics
• Fast and slow dynamics of malaria and the \(S\)-gene frequency
• Dynamics in the 1:2 spatial resonance with broken reflection symmetry
• Mixed-mode oscillations in a three time-scale system of ODEs motivated by a neuronal model
• Dynamical probing of the mechanisms underlying calcium oscillations
• Bifurcation routes to chaos in an extended Van der Pol's equation applied to economic models
• A dynamical systems approach to simulating macroscale spatial dynamics in multiple dimensions
• Prey dynamics under generalist predator culling in stage structured models
• Stochastic simulation of a model for circadian rhythms in plants
• Analysis of recurrent networks of pulse-coupled noisy neural oscillators
• A three species dynamical system involving prey-predation, competition and commensalism
• Efficient gluing of numerical continuation and a multiple solution method for elliptic PDEs
• Limits and dynamics of stochastic neuronal networks with random heterogeneous delays
• The dynamics of acute inflammation
• Lecture notes on numerical analysis of nonlinear equations
• A reduced mathematical model of the acute inflammatory response. I: Derivation of model and analysis of anti-inflammation
• Greater accuracy and broadened applicability of phase reduction using isostable coordinates
• Phase reduction and phase-based optimal control for biological systems: a tutorial
• An intracellular \(\text{Ca}^{2+}\) subsystem as a biologically plausible source of intrinsic conditional bistability in a network model of working memory
• Sensitivity of the dynamics of the general Rosenzweig-Macarthur model to the mathematical form of the functional response: a bifurcation theory approach
• Dynamics of Leslie-Gower type generalist predator in a tri-trophic food web system
• The Filippov equilibrium and sliding motion in an Internet congestion control model
• Stability of anti-phase and in-phase locking by electrical coupling but not fast inhibition alone
• Oscillatory dynamics for a coupled membrane-bulk diffusion model with Fitzhugh-Nagumo membrane kinetics
• Global analysis of a Holling type II predator-prey model with a constant prey refuge
• Emergent dynamics in delayed attractive-repulsively coupled networks
• Hopf bifurcation control via a dynamic state-feedback control
• Mixed-mode oscillations and chaos from a simple second-order oscillator under weak periodic perturbation
• Effects of positive electrical feedback in the oscillating Belousov-Zhabotinsky reaction: experiments and simulations
• Title not available (Why is that?)
• Synchronized Oscillatory Dynamics for a 1-D Model of Membrane Kinetics Coupled by Linear Bulk Diffusion
• From coupled networks of systems to networks of states in phase space
• Modelling the role of angiogenesis and vasculogenesis in solid tumour growth
• Period-doubling cascades of canards from the extended Bonhoeffer-van der Pol oscillator
• Nonlinear eigenvalue problems for higher-order model equations
• Mathematical modeling of cerebral capillary blood flow heterogeneity and its effect on brain tissue oxygen levels
• Dynamics and bifurcation of a model for hormonal control of the menstrual cycle with inhibin delay
• Complex dynamics in a three-level trophic system with intraspecies interaction
• DYNAMICS OF A TWO-DIMENSIONAL DELAYED SMALL-WORLD NETWORK UNDER DELAYED FEEDBACK CONTROL
• Spatio-Temporal Modelling of the p53–mdm2 Oscillatory System
• Hybrid Integrate-and-Fire Model of a Bursting Neuron
• A phantom bursting mechanism for episodic bursting
• Spatio-temporal patterns of Hopf bifurcating periodic oscillations in a pair of identical tri-neuron network loops
• Phase models and oscillators with time delayed coupling
• Rigorous Verification of Hopf Bifurcations via Desingularization and Continuation
• Effects of small world connection on the dynamics of a delayed ring network
• Interaction of canard and singular Hopf mechanisms in a neural model
• Sustained Spatial Patterns of Activity in Neuronal Populations without Recurrent Excitation
• Invasion dynamics in an intraguild predation system with predator-induced defense
• Bifurcation analysis of a model for hormonal regulation of the menstrual cycle
• Delay independent stability of linear switching systems with time delay
• Spatially localized structures in dissipative systems: open problems
• LOCAL AND GLOBAL HOPF BIFURCATION IN A TWO-NEURON NETWORK WITH MULTIPLE DELAYS
• Mechanisms for Frequency Control in Neuronal Competition Models
• The Effects of Varying the Timing of Inputs on a Neural Oscillator
• Competition in the presence of a virus in an aquatic system: an SIS model in the chemostat

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