scientific article; zbMATH DE number 2050734

MaRDI QIDQ4452928zbMATH OpenFDO

Authors Hans El-Samad, Hiroyuki Kurata, John C. Doyle, Mustafa Khammash

Publication date 7 March 2004

zbMATH Keywords

gene regulatory networksstochastic modellingbacteriafeedback regulationheat shock response

Mathematics Subject Classification ID

Cell biology (92C37) Feedback control (93B52) Application models in control theory (93C95)

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Cited in

(16)

• The PafBC-mediated response sensitizes a bistable DNA damage response in \textit{Mycobacteria}
• Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
• Ribosome abundance control in prokaryotes
• Slow-scale tau-leaping method
• Modeling feedback loops in the H-NS-mediated regulation of the \textit{Escherichia coli bgl} operon
• Explicit stabilized multirate method for stiff stochastic differential equations
• Computational identification of irreducible state-spaces for stochastic reaction networks
• Control of \textit{Streptococcus pyogenes} virulence: modeling of the CovR/S signal transduction system
• Reaction System Models for the Heat Shock Response
• Stochastic modelling of the eukaryotic heat shock response
• A combined modelling and experimental study of heat shock factor SUMOylation in response to heat shock
• Dynamic responses of protein homeostatic regulatory mechanisms to perturbations from steady state
• Optimal choice between feedforward and feedback control in gene expression to cope with unpredictable danger
• Feedbacks and tipping points in organismal response to oxidative stress
• The inverse correlation between robustness and sensitivity to autoregulation in two-component systems
• Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis

Describes a project that uses

Uses Software

• DASPK 3.0

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