Reconstructing the hidden states in time course data of stochastic models

DOI10.1016/j.mbs.2015.08.015zbMath1351.92015OpenAlexW1859064944WikidataQ30993183 ScholiaQ30993183MaRDI QIDQ900729

Christoph Zimmer

Publication date: 22 December 2015

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2015.08.015

zbMATH Keywords

parameter estimationstate estimationstochastic modelssystems biology

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Point estimation (62F10) Markov processes: estimation; hidden Markov models (62M05) Systems biology, networks (92C42)

Uses Software

• EnKF
• COPASI
• CERENA

Cites Work

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• Method of conditional moments (MCM) for the chemical master equation
• Bayesian analysis of mixture models with an unknown number of components\,--\,an alternative to reversible jump methods.
• Parameter estimation for stochastic hybrid models of biochemical reaction networks
• Nonlinear Time Series
• The Optimal Control of Partially Observable Markov Processes over a Finite Horizon
• Inverse Gillespie for inferring stochastic reaction mechanisms from intermittent samples
• Bayesian Inference for Stochastic Kinetic Models Using a Diffusion Approximation

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