Method of conditional moments (MCM) for the chemical master equation
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Publication:404792
DOI10.1007/S00285-013-0711-5zbMATH Open1302.92070OpenAlexW2127660420WikidataQ43550501 ScholiaQ43550501MaRDI QIDQ404792FDOQ404792
Fabian J. Theis, Viktor Wolf, A. Kazeroonian, J. Hasenauer
Publication date: 4 September 2014
Published in: Journal of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s00285-013-0711-5
method of momentsgene expressiondifferential algebraic equationschemical master equationcontinuous-time discrete-state Markov processhybrid stochastic-determinstic models
Applications of continuous-time Markov processes on discrete state spaces (60J28) Genetics and epigenetics (92D10)
Cites Work
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- Markovian modelling of gene product synthesis
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- Hybrid method for the chemical master equation
- Solving high-index DAEs by Taylor series
- Effects of immigration on some stochastic logistic models: A cumulant truncation analysis
- Parameter estimation for stochastic hybrid models of biochemical reaction networks
- Computational complexity of the graph approximation problem
- Inexact Uniformization Method for Computing Transient Distributions of Markov Chains
- Accounting for extrinsic variability in the estimation of stochastic rate constants
- Moment closure based parameter inference of stochastic kinetic models
- Computing the moments of high dimensional solutions of the master equation
Cited In (18)
- Bye bye, linearity, bye: quantification of the mean for linear CRNs in a random environment
- Mean-field analysis of hybrid Markov population models with time-inhomogeneous rates
- Approximation and inference methods for stochastic biochemical kinetics—a tutorial review
- Abstraction-based segmental simulation of chemical reaction networks
- Automated generation of conditional moment equations for stochastic reaction networks
- Algebraic expressions of conditional expectations in gene regulatory networks
- Exponential equilibration of genetic circuits using entropy methods
- Stochastic reaction networks with input processes: analysis and application to gene expression inference
- Stochastic modeling and numerical simulation of gene regulatory networks with protein bursting
- Hybrid framework for the simulation of stochastic chemical kinetics
- Fluctuating-rate model with multiple gene states
- Mean-Field Limits Beyond Ordinary Differential Equations
- Jump-Diffusion Approximation of Stochastic Reaction Dynamics: Error Bounds and Algorithms
- Reconstructing the hidden states in time course data of stochastic models
- Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks
- Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view
- Hybrid master equation for jump-diffusion approximation of biomolecular reaction networks
- Computational Identification of Irreducible State-Spaces for Stochastic Reaction Networks
Uses Software
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