Method of conditional moments (MCM) for the chemical master equation
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Publication:404792
DOI10.1007/s00285-013-0711-5zbMath1302.92070OpenAlexW2127660420WikidataQ43550501 ScholiaQ43550501MaRDI QIDQ404792
Publication date: 4 September 2014
Published in: Journal of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s00285-013-0711-5
differential algebraic equationsmethod of momentsgene expressionchemical master equationcontinuous-time discrete-state Markov processhybrid stochastic-determinstic models
Genetics and epigenetics (92D10) Applications of continuous-time Markov processes on discrete state spaces (60J28)
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Cites Work
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- SUNDIALS
- Novel moment closure approximations in stochastic epidemics
- Moment closure based parameter inference of stochastic kinetic models
- Computing the moments of high dimensional solutions of the master equation
- Solving the chemical master equation for monomolecular reaction systems analytically
- Solving high-index DAEs by Taylor series
- Effects of immigration on some stochastic logistic models: A cumulant truncation analysis
- Markovian modelling of gene product synthesis
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Hybrid method for the chemical master equation
- On Reduced Models for the Chemical Master Equation
- Using Gene Expression Noise to Understand Gene Regulation
- Parameter estimation for stochastic hybrid models of biochemical reaction networks
- Computational complexity of the graph approximation problem
- Inexact Uniformization Method for Computing Transient Distributions of Markov Chains
- A Polyalgorithm for the Numerical Solution of Ordinary Differential Equations
- Using Krylov Methods in the Solution of Large-Scale Differential-Algebraic Systems
- Consistent Initial Condition Calculation for Differential-Algebraic Systems
- Accounting for extrinsic variability in the estimation of stochastic rate constants
- Hybrid Stochastic--Deterministic Solution of the Chemical Master Equation
- The Finite State Projection Approach for the Analysis of Stochastic Noise in Gene Networks
- Approximate Moment Dynamics for Chemically Reacting Systems
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